PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1089541g005
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family bHLH
Protein Properties Length: 230aa    MW: 25724.4 Da    PI: 7.879
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1089541g005genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH322.1e-1067114454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++  rE+ RRdr+N++f eL  +l +    +++K +Ka+iL  A + + +L
  PDK_30s1089541g005  67 SKACREKIRRDRLNDRFLELSAILDPG---RHPKFDKASILSDAARLLVQL 114
                         6789**********************9...9************99877665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.63663114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.06E-766119No hitNo description
PfamPF000104.9E-867114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.68E-1367131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-1168136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-769120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MGSNAIEDYW IDGGGSDGEL RCALESFCEM APTAGVRIEE AYRDASGLEQ ASLRKRMRDE  60
SCAGPKSKAC REKIRRDRLN DRFLELSAIL DPGRHPKFDK ASILSDAARL LVQLRSEAQQ  120
LKESNEKLQE TIKDLKVEKN ELREEKMRLK ADKERLEQQI KVMSVPPAGF MPHPIAYHPT  180
AATVAFAPHG QAPPSKCAPF TAFPGVAMWK WLPPPVVDTT QDTKLWPPNA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008803703.11e-171PREDICTED: transcription factor bHLH115-like
SwissprotQ9FH374e-64ILR3_ARATH; Transcription factor ILR3
TrEMBLM0TEK81e-125M0TEK8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P04180_0011e-124(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81733646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.13e-65bHLH family protein